DBD
.
Alternative splicingBlastCandida spDEFGHIJKLMNOPQRSTUVWXYZ
 
Search according to your keyword
P53 The IARC TP53 Mutation Database http://www-p53.iarc.fr/
p53 WEB SITE & Datbase http://p53.free.fr/
Database of germline p53 mutations http://www.lf2.cuni.cz/projects/germline_mut_p53.htm
p53 mutation database in human mutational database http://www.cbi.pku.edu.cn/mirror/GenomeWeb/human-gen-db-mutation.html
Pair wise Alignment Alignment Databases (List of alignment database) http://www.genomics.ceh.ac.uk/aligndb/about.php
PASS2 : a semi-automated database of Protein Alignments Organised as Structural Superfamilies http://caps.ncbs.res.in/campass/pass.html
Histone Database : Primary reference: The Histone Database: a comprehensive resource for histones and histone fold-containing proteins http://research.nhgri.nih.gov/histones/web/alignments.shtml
HOMSTRAD : a collection of protein families, clustered on the basis of sequence and structural similarity. http://www-cryst.bioc.cam.ac.uk/homstrad/
EMBL-ALIGN : The EBI accepts submissions of nucleotide sequence alignment data http://www.ebi.ac.uk/webin-align/webin_align_listali.html
SUPFAM : This database consists of colonies of potentially related homologous protein domains, with and without three-dimensional structural information, forming superfamilies. http://pauling.mbu.iisc.ernet.in/~supfam/
ALIGN : ALIGN is a compendium of sequence alignments: it is a companion resource to PRINTS. http://umber.sbs.man.ac.uk/dbbrowser/ALIGN/
HSSP : Structural homology can be inferred from the level of sequence similarity. http://www.cmbi.kun.nl/gv/hssp/
Paragoly Paradb is an object oriented database created to predict and map paralogous regions in vertebrate genomes. http://abi.marseille.inserm.fr/paradb/
Parasite Host-parasite database http://www.nhm.ac.uk/research-curation/projects/host-parasites/
Parasite information database http://www.doxdesk.com/parasite/database.html
Parasites Databases http://www.tigr.org/tdb/parasites/
Global Mammal Parasite Database http://www.mammalparasites.org/
WU-Blast2 - Parasite Genomes Database Query http://www.ebi.ac.uk/blast2/parasites.html
Parasitology Database http://hwml.unl.edu/PARASITE/
The Parasite Database http://www.parasitesrus.com/
Pscroph, a parasitic plant EST database enriched for parasite associated transcripts http://www.citebase.org/abstract?id=oai%3Abiomedcentral.com%3A1471-2229-5-24
Browser Parasites http://allentech.net/parasite/index.phtml
Comparasite: A database for comparative study of parasite cDNAs  
Pathway Metabolic Database http://cgsc.biology.yale.edu/metab.html
Metabolic database (Metabolome) http://metabolic-database.com/
KEGG (PATHWAY Database) http://www.genome.jp/kegg/pathway.html
BioSilico is a web-based database system that facilitates the search and analysis of metabolic pathways http://biosilico.kaist.ac.kr/
BioCarta (Charting Pathway of Life) http://www.biocarta.com/genes/
RAMEDIS, the Rare Metabolic Diseases Database http://www.ramedis.de/
PathCase: Metabolic Pathways Database System http://nashua.case.edu/pathwaysweb/
MetaCyc is a database of nonredundant, experimentally elucidated metabolic pathways. http://metacyc.org/
MPW: the Metabolic Pathways Database http://citeseer.ist.psu.edu/selkov98mpw.html
Small Metabolic Pathway Database http://cgsc.biology.yale.edu/metab.html
BioCyc - Pathway/genome databases for many bacteria
http://biocyc.org/
BRITE - Biomolecular Relations in Information Transmission and Expression Molecular interactions and pathways database, part of the KEGG system http://www.genome.ad.jp/brite
Pattern Database for cross species expression pattern comparisons http://ani.embl.de/4DXpress
PCR PCR Database http://pcr.sdstate.org/
LAM-PCR Database https://consert.gatc-biotech.com/lampcr/
RTPrimerDB, Real Time PCR Primer and Probe Database http://medgen.ugent.be/rtprimerdb/
PCR library http://www.gednet.org/?page_id=20
The Distribution of the Human DNA-PCR Polymorphisms http://www.uni-duesseldorf.de/WWW/MedFak/Serology/dna.html
DNA Methylation analysis PCR Primer Database http://medgen.ugent.be/methprimerdb/
dbSTS (database of "Sequence Tagged Sites) http://www.ncbi.nlm.nih.gov/dbSTS/
Qualitative Quantitative PCR Database (list of PCR Database) http://cardiogenomics.med.harvard.edu/groups/proj1/pages/pcr-db_static.html
PDB Protein Data Bank(PDB) http://molbio.info.nih.gov/doc/mtg/pdb.html
Protein Database http://www.rcsb.org/pdb/home/home.do
Pedigree The Pedigree Database http://www.pedigreedatabase.com/
Open database for Poodle pedigrees http://www.poodlepedigree.com/
Keeshond Pedigree Database http://www.keesdog.com/
The Online Pedigree Database http://pawvillage.com/
Pea aphid AphidBase - Genomic database for the pea aphid (Acyrthosiphon pisum)
http://www.aphidbase.com/
Peptide Welcome to the Antimicrobial Peptide Database http://aps.unmc.edu/AP/main.php
Bioactive Polypeptide Database http://biopd.bjmu.edu.cn/help.asp
CoPS - Comprehensive Peptide Signature Database http://203.90.127.70/copsv2/index.asp
Peptide Database (Cancer) http://www.cancerimmunity.org/peptidedatabase/Tcellepitopes.htm
SPdb : A Signal Peptide Database http://proline.bic.nus.edu.sg/spdb/
Welcome to the JenPep  Database. JenPep is a database of quantitative binding data for immunological protein-peptide interactions. http://www.jenner.ac.uk/JenPep/
Database of Nonribosomal Peptide Synthetases http://linux1.nii.res.in/~zeeshan/webpages/home.html
Peptide Antigen Database http://www.proteinlounge.com/peptide_home.asp
NRPSDB: A Database of NONRIBOSOMAL PEPTIDE SYNTHETASES http://203.90.127.50/~zeeshan/webpages/nrpsall.html
The MHC-Peptide Interaction Database version T (MPID-T) is a new generation database for sequence-structure-function information on T cell receptor/peptide/MHC interactions.  It contains all structures of TcR/pMHC and pMHC complexes, with emphasis on the structural characterization of these complexes. http://surya.bic.nus.edu.sg/mpidt/
Bioactive Peptide Database - Details http://www.molecularstation.com/bioinformatics/link/detail/link-815.html
AntiJen Database:Peptide Library Search  (A kinetic, thermodynamic and cellular Database V2) http://www.jenner.ac.uk/AntiJen/aj_peplib.htm
PepSeeker: a database of proteome peptide identifications for investigating fragmentation patterns. http://nwsr.bms.umist.ac.uk/pepseeker
A Database Of Mhc Ligands And Peptide Motifs (Ver. 1.0) http://www.syfpeithi.de/
System Biology Database http://www.proteinlounge.com/
GenomeNet icon (DBGET Search – LITDB) LITDB is a database of key words and key phrases for compounds, fact data, and subjects from the protein and peptide literature. http://www.genome.ad.jp/htbin/www%5Fbfind?litdb
Arabidopsis Unannotated Secreted Peptide Database http://peptidome.missouri.edu/
Comprehensive Database of Mechanisms of Peptide Fragmentation http://www.highchem.com/publications/comprehensive-database-of-mechanisms-of-peptide-fragmentation.html
Antimicrobial Peptide Database http://aps.unmc.edu/AP/main.html
PeptideMass  cleaves a protein sequence from the UniProt Knowledgebase (Swiss-Prot and TrEMBL) or a user-entered protein sequence with a chosen enzyme, and computes the masses of the generated peptides. http://www.expasy.ch/tools/peptide-mass.html
Peptide Database http://www.peptideatlas.org/
S A P D - Synthetic Antibiotic Peptide Database http://www.molecularstation.com/bioinformatics/link/detail/link-821.html
The  MHC-Peptide Interaction Database (MHCP) is a curated MySQL database for sequence-structure-function information on MHC-Peptide interactions. http://sege.ntu.edu.sg/wester/mhcp/intro.htm
Peptide Antigen Database http://www.peptides.net/index.aspx?ID=76269
BciPep a database of B cell epitopes (Bcipep is collection of the peptides having the role in Humoral immunity.) http://www.imtech.res.in/raghava/bcipep/info.html
PEPSEEKER (Peptide Identification Database) http://www.nwsr.manchester.ac.uk/cgi-bin/pepseeker/pepseek.pl
ProteinProspector http://prospector.ucsf.edu/
Peptide Conformation Database http://www.peptidome.org/products/conformation.htm
PenBase is a curated database devoted to Penaeidins http://www.penbase.immunaqua.com/
DOMINO: a database of domain-peptide interactions. http://mint.bio.uniroma2.it/domino/search/searchWelcome.do
Peptide Database List http://www.peptidestation.com/peptide-links/index.php?list=top
Bioinformatics Centre , IISc / Research (Peptide Database) http://www.physics.iisc.ernet.in/~dichome/rh.htm
PepBank - a database of peptides based on sequence text mining and public peptide data sources http://pepbank.mgh.harvard.edu/
ANTIMIC - Database of natural antimicrobial peptides http://research.i2r.a-star.edu.sg/Templar/DB/ANTIMIC/
  ASPD-Artificial Selected Proteins/Peptides Database http://wwwmgs.bionet.nsc.ru/mgs/gnw/aspd/
Peptide signature CoPS: Comprehensive peptide signature database http://cops.igib.res.in/copsv2/index.html
Pest Australian Plant Pest Database http://www.planthealthaustralia.com.au/appd/index.asp
PLANT PEST DATABASE  http://infoagro.net/health/caraphin/plantpest.cfm
Find a Pest Database http://www.scientificpest.com.au/spmpdbcr.html
Pest Control Database http://www.eddingerspestcontrol.com/pests/pests.htm
Pest database http://mips.gsf.de/proj/cdna/Sites/PP_EST_Database.htm
Pharmacogenomics Pharmacogenomics resources http://www.pharmgkb.org/
Pharmacogenomics database http://libraryprn.blogspot.com/2006/10/new-pharmacogenomics-database.html
Pharmacology Pharmacology  databases http://www.ebioinfogen.com/pharma.htm
List of Phramacology Databases http://www.infochembio.ethz.ch/links/en/pharm_db.html
Clinical Pharmacology Resources http://www.geocities.com/HotSprings/2255/drugs.html
Pharmacophore 3D Database Searching in Drug Discovery http://www.netsci.org/Science/Cheminform/feature06.html
Phenotype Genotype and Phenotype Database Management System (GPDB) http://apps.sbri.org/gpdb/
IRSA Rett Phenotype Database http://www.ichr.uwa.edu.au/rett/irsa
RescueMu Maize Mutant Phenotype Database http://www.maizegdb.org/rescuemu-phenotype.php
GenomeRNAi is a database of phenotypes from systematic RNA interference (RNAi) screens in cultured Drosophila cells. http://www.dkfz.de/signaling2/rnai/index.php
DECIPHER - DatabasE of Chromosomal Imbalance and Phenotype in Humans using Ensembl Resources http://www.sanger.ac.uk/PostGenomics/decipher/
MRPath Mouse Strain Phenotype Database http://www.mrpath.com/visiblemouse.html
InterRett Output Database http://www.ichr.uwa.edu.au/rett/irsa/pages/output/
dbGaP (database of Genotype and Phenotype) http://www.ncbi.nlm.nih.gov/sites/entrez?db=gap
The AGNS Phenotype DataBase http://wwwmgs.bionet.nsc.ru/agns/phenotype.html
Phenylalanine PAHdb (PAH : Phenylalanine Hydroxylase Locus Knowledgebase web site) http://www.pahdb.mcgill.ca/
ELM is becoming the primary resource for phosphorylation data. http://www.cbs.dtu.dk/databases/PhosphoBase/
Phosphorylation site database http://vigen.biochem.vt.edu/xpd/xpd.htm
A database of S/T/Y/ Phosphorylation site http://phospho.elm.eu.org/
(PHOSIDA) Phosphorylation site database http://www.phosida.com/
PhosphoBase: a database of phosphorylation sites. http://www.bio-computing.org/showabstract.php?pmid=9399879
Phylip Package phylip http://pdb.finkproject.org/pdb/package.php/phylip
Phylogenetics Treebase (A Database of Phylogenetic Analysis) http://www.treebase.org/
Legume "Phylo-informatics" dbase http://www.public.asu.edu/~mfwojci/legumephylo_dBase.html
PALI (Phylogeny and ALIgnment of homologous protein structures) http://pauling.mbu.iisc.ernet.in/~pali/
The Phylogeny of Sleep Website http://www.bumc.bu.edu/Dept/Content.aspx?DepartmentID=481&PageID=12252
Phylogenetical cisRED: Phylogenetically conserved regulatory DNA sequence motifs http://www.cisred.org/
Pig Pig Genome Resources http://www.ncbi.nlm.nih.gov/genome/guide/pig/
Pig Genome Information http://www.animalgenome.org/pigs/
Pig Expressed Sequence Tags Database http://pigest.genome.iastate.edu/
Sus scrofa genome http://pre.ensembl.org/Sus_scrofa/index.html
Plaque Amyloid plaque forming protein main page http://www.cmbi.kun.nl/swift/FUNPEP/gergo/
Plant PlantGDB (Plant Genome Database) http://www.plantgdb.org/
MIPSPlantsDB - MIPS Plants Databases. The MIPS plant genomics group focuses on the bioinformatics of plant genomes. http://mips.gsf.de/projects/plants
List of Plant Genome Databases and Resources http://www.cbi.pku.edu.cn/mirror/GenomeWeb/plant-gen-db.html
GO annotations for agriculturally important plants and animals http://www.agbase.msstate.edu/
BarleyBase-Expression profiling of plant genomes http://www.barleybase.org/
Plasmid Plasmid Genome Database http://www.genomics.ceh.ac.uk/plasmiddb/
Plasmid Information Database http://dnaseq.med.harvard.edu/plasmid_database.htm
PlasmID (Plasmid information Database) http://plasmid.med.harvard.edu/PLASMID/
Plasmid Home Page http://www.plasmids.bham.ac.uk/default.htm
Database of Plasmid Replicons http://www.essex.ac.uk/bs/staff/osborn/DPR_home.htm
Plasmid Database http://gind-db.ucsf.edu:8000/cgi-bin/Plasmid/main_menu2.cgi
The NCDIR Plasmid Database http://routlab-mac.rockefeller.edu/cgi-bin/plasmid/clone.pl
Plasmid Database http://www.hirschilab.org/plasmid/
Plasmid::db is a project management tool for molecular biology http://plasmidb.sourceforge.net/
Pleiotropic HTLV-I Tax (Tax Pleiotropic Effects Database) http://www.virologycentralmultimedia.com/tax/tax-pleiotropic-effects-database.php
Polyanion DB-PABP: Database of experimentally characterized polyanion-binding proteins http://ppa.bcf.ku.edu/DB_PABP/
Polymerase Human DNA polymerase Gamma Mutation Database http://dir-apps.niehs.nih.gov/polg/
MITOMAP (A human mitochondrial genome database) http://www.mitomap.org/
Polyadenylation Poly Adb Polyadenylation Database http://polya.umdnj.edu/
Polymer Database PoLyInfo systematically provides various data required for polymeric material design. The main data source is academic literature on polymers. http://polymer.nims.go.jp/polyinfo_top_eng.htm
Potato Solanaceae Genome Database http://www.solgd.org/
PCR (Polymerase Chain Reaction) PCR: The Web page for information and links on PCR http://www.horizonpress.com/gateway/pcr.html
Polymorphism The Singapore Human Mutation And Polymorphism Database http://shmpd.bii.a-star.edu.sg/
A new polymorphism database http://hum-molgen.org/NewsGen/08-1998/000003.html
IPD - The Immuno Polymorphism Database http://www.ebi.ac.uk/ipd/
BioPD  --- Bioactive  Polypeptide Database is a resource of bioactive peptides. http://biopd.bjmu.edu.cn/
Soy Bean Genome Database http://soybeangenome.siu.edu/
Merops – Peptidase Database http://merops.sanger.ac.uk/cgi-bin/make_substrates?id=A02.007
Pre-tRNA-processing protein PTA1 http://beta.uniprot.org/uniprot/Q01329
dbRIP is a database of human Retrotransposon Insertion Polymorphisms (RIPs), http://falcon.roswellpark.org:9090/
Post-translational dbPTM: Post-translational modifications of proteins http://dbptm.mbc.nctu.edu.tw/
Primer RTPrimerDB  (Real Time PCR Primer and Probe Database) http://medgen.ugent.be/rtprimerdb/
Primer Sequences database http://plantbio.berkeley.edu/~bruns/primers.html
A Primer on Databases and Catalogs http://www.usg.edu/galileo/skills/unit04/
Real Time PCR Primer Sets http://www.realtimeprimers.org/
Primers database http://ntddb.abcc.ncifcrf.gov/cgi-bin/Primers.pl
Access the Nematode Primer Database http://ucdnema.ucdavis.edu:591/KNOWL/PRIMERDB/default.htm
IMGT/PRIMER-DB Query page http://imgt3d.igh.cnrs.fr/PrimerDB/Query_PrDB.pl
Embedded Database Primer http://www.dbazine.com/ofinterest/oi-articles/koopmann5
A Database Primer http://www.databaseprimer.com/index.html
Human prion gene coding region http://www.mad-cow.org/prion_point_mutations.html
Pristionchus pacificus A database on the nematode Pristionchus pacificus http://appadb.eb.tuebingen.mpg.de/
Probe Molecular Probe Data Base http://www.biotech.ist.unige.it/interlab/mpdb.html
RTPrimerDB: the real-time PCR primer and probe database http://medgen.ugent.be/rtprimerdb/
Probe-Database http://clsql.b9.com/manual/probe-database.html
MX Probe Data Base http://mxdb.com/
Real Time PCR Primer and Probe Database http://biowww.net/detail-417.html
Pre-Designed Oligonucleotide Database http://www.ctaalliance.org/MCBI/OligoDatabase.html
CISMM Magnetic Probe Database http://www.cs.unc.edu/Research/nano/cismm/dissemination/magprobe.html
Viral Probe Database http://genestamp.ibms.sinica.edu.tw/virus/viralProbe.htm
The Zebrafish Database Class: RNA PROBE http://zfin.org/zf_info/dbase/PAPERS/ZFIN_DataModel/sectionii_16.html
A Database To Aid Probe Design For Virus Identification http://bioinfo.csie.ncu.edu.tw./
PROBE: A Prospective Database of Infants with Cholestasis http://www.barcnetwork.org/families/probe.html
Barley Genetic Probe Database http://barleygenomics.wsu.edu/db1/db1-searchframes.html
Molecular Probe Data Base (MPDB) http://citeseer.ist.psu.edu/149336.html
Pseudogene Pseudogene information  http://www.pseudogene.org/
Hoppsigen (Homologous Processed Pseudogenes database rel 4.0) http://pbil.univ-lyon1.fr/databases/hoppsigen.html
UI Pseudogenes http://genome.uiowa.edu/pseudogenes/
Profile Profile Database: Home http://www.profiledatabase.com/
PRODORIC is a comprehensive database about molecular networks in prokaryotes with focus on transcriptional regulation.It includes the biggest available list of transcription factor binding sites in prokaryotes. http://prodoric.tu-bs.de/
PPD - Proteome Profile Database http://www.bioinfo.de/isb/2004/04/0019/
Prokaryote Prokaryote Database http://www.pseudogene.org/cgi-bin/db-gen.cgi?type=Prokaryote
A recent addition has been community analysis with terminal restriction fragment length polymorphisms (T-RFLP). http://rdp8.cme.msu.edu/html/TAP-trflp.html
The Prokaryotic Growth Temperature Database (PGTdb) http://pgtdb.csie.ncu.edu.tw/
Prokaryote Genome Size Database http://www.genomesize.com/prokaryotes/
Contiguous Proline repeats http://www.ncl-india.org/trips/mono/PRO10.HTM
Comparative Genometrics: DNA walks, nucleotide skews and other biometric measures of prokaryotic genomes http://www.unil.ch/comparativegenometrics/
Promotor Transcriptional Regulatory Element Database http://rulai.cshl.edu/cgi-bin/TRED
The Eukaryotic Promoter Database is an annotated non-redundant database http://www.epd.isb-sib.ch/
PRESTA promoter database, EST http://baloun.entu.cas.cz/presta/
Eukaryotic Promoter Database http://www.genome.jp/dbget-bin/www_bfind?epd
Osteo-Promoter Database (OPD) is a catalogic database of functional genesin osteogenic proliferation and differentiation. OPD analyzes promoters ofgenes which differentiates along with the osteogenic pathway. http://www.opd.tau.ac.il/
SCPD (The Promoter Database of Saccharomyces cerevisiae)  http://rulai.cshl.edu/SCPD/
Drosophila Core Promoter Database (DCPD) http://www-biology.ucsd.edu/labs/Kadonaga/DCPD.htm
GPD (Genomatix Promoter Database) http://www.genomatix.de/gpd.html
TiProD: Tissue-Specific Promoter Database http://tiprod.cbi.pku.edu.cn:8080/index.html
Promoters (List of Promoter Database) http://bip.weizmann.ac.il/toolbox/seq_analysis/promoters.html
Promoter Region Primer Database for Arabisopsis Genome http://vhp.ntu.edu.sg/arab/index.html
EPD (The Eukaryotic Promoter Database) http://www.epd.isb-sib.ch/
Transcription factor binding sites http://www.oreganno.org/oregano/OtherResources.jsp
Promoter databases (wikipedia database list) http://www.biodirectory.com/biowiki/Promoter_databases
Prosite Database of protein domains, families and functional sites. http://www.expasy.ch/prosite/
Prosthetic The Prosthetic groups and Metal Ions in Protein Active Sites Database Version 2.0 http://metallo.scripps.edu/promise/
Protease The MEROPS database (Peptide Database) http://merops.sanger.ac.uk/
HIV Protease Database http://mcl1.ncifcrf.gov/hivdb/index.html
HIV Structural Database & Chem-BLAST http://srdata.nist.gov/hivdb/
Proteases of E. coli http://www.cf.ac.uk/biosi/staff/ehrmann/tools/proteases.index.html
HIV Drug Resistance Database http://hivdb.stanford.edu/
Protease Research information http://www.proteases.org/
HIV drugs database http://www.coreynahman.com/antiHIVdrugdatabase61499.html
Plant PI DataBase http://www.ba.itb.cnr.it/PLANT-PIs/
HIV Protease Structural Database http://portal.acm.org/citation.cfm?id=792771.793832
Proteases of E. coli database http://www.cf.ac.uk/biosi/staff/ehrmann/tools/proteases/allproteases.html
Database of potential inhibitors of SARS protease http://lib.bioinfo.pl/blid:356
CUTDB: Community annotation resource for proteases, their substrates and cleavage sites http://cutdb.burnham.org/
Proteasome PlantsUBQ - A Functional Genomics Database for the Ubiquitin/26S Proteasome Proteolytic Pathway in Plants http://plantsubq.genomics.purdue.edu/
Protein The RCSB PDB provides a variety of tools and resources for studying the structures of biological macromolecules and their relationships to sequence, function, and disease. http://www.rcsb.org/
Human Protein Reference Database http://www.hprd.org/
BioThesaurus: A collection of gene/protein names and associated sequences http://pir.georgetown.edu/iprolink/biothesaurus
ExPASy Proteomics Server http://expasy.org/
Nuclear Protein Database (NPD) http://npd.hgu.mrc.ac.uk/
he Human Mitochondrial Protein Database (HMPDb) provides comprehensive data on mitochondrial and human nuclear encoded proteins involved in mitochondrial http://bioinfo.nist.gov/hmpd/index.html
A Database of Human Unidentified Gene-Encoded (HUGE) Large Proteins Analyzed http://www.kazusa.or.jp/huge/
UniProt (Protein Information Resource) http://pir.georgetown.edu/
Pfam is a large collection of multiple sequence alignments and hidden Markov models covering many common protein domains and families. http://www.sanger.ac.uk/Software/Pfam/
PDD - NIMH-NCI Protein-Disease Database http://www-lmmb.ncifcrf.gov/PDD/
Benchmark-Protein classification benchmark collection: training/test sets for machine learning http://net.icgeb.org/benchmark/
Yeast Protein Complex Database http://yeast.cellzome.com/
Secreted Protein Database http://spd.cbi.pku.edu.cn/
BindingDB-Binding affinities of protein-ligand and other complexes
http://www.bindingdb.org/
Binding MOAD- Binding Mother of All Databases: a database of protein-ligand crystal structures http://www.bindingmoad.org/
The TC system is analogous to the Enzyme Commission (EC) system for classification of enzymes, but incorporates phylogenetic information additionally. http://www.tcdb.org/
Arabidopsis Nucleolar Protein Database - Home http://bioinf.scri.sari.ac.uk/cgi-bin/atnopdb/home
Protein Structure Database http://www.psc.edu/~deerfiel/PSdb/
ProDom is a comprehensive set of protein domain families automatically generated from the SWISS-PROT and TrEMBL sequence databases http://prodom.prabi.fr/
The C. elegans Protein Database: Wormpep http://www.sanger.ac.uk/Projects/C_elegans/WORMBASE/current/wormpep.shtml
GenomeNet icon (DBGET Search - Protein-today) http://www.genome.ad.jp/dbget-bin/www_bfind?protein-today
UniProtKB/Swiss-Prot (Protein Database) http://www.ebi.ac.uk/swissprot/
Inner Ear Protein Database http://oto.wustl.edu/thc/innerear2d.htm
Protein Folding Database http://pfd.med.monash.edu.au/
CATH Protein Structure Classification Database http://www.cathdb.info/
The HIV-1, human, protein interaction database http://www.ncbi.nlm.nih.gov/RefSeq/HIVInteractions/
DExH/Protein Database http://www.helicase.net/dexhd/dbhome.htm
Plant Protein Membrane Database http://aramemnon.botanik.uni-koeln.de/
BioMinT is an easy to use information retrieval and extraction tool targetted at the online biomedical literature. http://biomint.pharmadm.com/
The MIPS Mammalian Protein-Protein Interaction Database http://mips.gsf.de/proj/ppi/
TransMembrane Protein DataBase http://bioinfo.si.hirosaki-u.ac.jp/~TMPDB/
Biological databases (Database Library) http://www.biobase-international.com/
Ligand Protein Database http://lpdb.scripps.edu/
Protien to protein interaction database http://www.anc.ed.ac.uk/mscs/PPID/
gpDB: a database of G-proteins and their interaction with GPCRs http://biophysics.biol.uoa.gr/gpDB/
Simple Modular Architecture Research Tool (SMART) protein database http://smart.embl-heidelberg.de/
Ribosomal Protein Gene Database (RPG) http://ribosome.med.miyazaki-u.ac.jp/
Protein Ligand Database (v1.3) http://www-mitchell.ch.cam.ac.uk/pld/
SynDB: a Synapse protein DataBase based on synapse ontology. http://syndb.cbi.pku.edu.cn/
ProTherm (Thermodynamic Database for proteins and mutants) http://gibk26.bse.kyutech.ac.jp/jouhou/Protherm/protherm.html
Plprot - a plastid protein database-integrates data from large scale proteome analyses of different plastid types. http://www.plprot.ethz.ch/
SYSTERS (Protein Family Database) http://systers.molgen.mpg.de/
PDBTM (Protein Data Bank of Transmembrane Proteins) http://pdbtm.enzim.hu/
Phosphorylation Site Database http://vigen.biochem.vt.edu/xpd/xpd.htm
AAA Server Home Page (Triple ‘A’ Super family) http://aaa-proteins.uni-graz.at/
3Dee - Database of Protein Domain Definitions http://www.compbio.dundee.ac.uk/3Dee/
Nucleolar Proteome Database v 2.0 http://www.lamondlab.com/NOPdb/welcome.htm
PROKARYOTIC PROTEIN PHOSPHATASE DATABASE http://vigen.biochem.vt.edu/p3d/p3d.htm
MPCD : Marseille Protein Crystallization Database http://www.crmcn.univ-mrs.fr/mpcd/
Protein-protein interactions in various evolutionary lineages http://gemdock.life.nctu.edu.tw/3D-Interologs
Affinity data for protein-ligand complexes http://www.agklebe.de/affinity
ASPD-Artificial Selected Proteins/Peptides Database http://wwwmgs.bionet.nsc.ru/mgs/gnw/aspd/
Cybase: Proteins with cyclic backbones http://research1t.imb.uq.edu.au/cybase/
Protein conformations Decoys-R-Us: Computer-generated protein conformations based on sequence data http://dd.compbio.washington.edu/
Protein domains CDD: Curated alignments of protein domains from Pfam, SMART and COG databases http://www.ncbi.nlm.nih.gov/Structure/cdd/cdd.shtml
A database of protein domain families http://ekhidna.biocenter.helsinki.fi/sqgraph/pairsdb
Protein loop ArchDB-Automated classification of protein loop structures http://sbi.imim.es/archdb
Protein Subcellular Localization DBSubLoc: Database of protein Subcellular Localization http://www.bioinfo.tsinghua.edu.cn/dbsubloc.html
Proteome The Plasma Proteome Database http://www.plasmaproteomedatabase.org/
Open Proteomics Database http://apropos.icmb.utexas.edu/OPD/
ExPASy World Wide Web (WWW) proteomics server of the Swiss ... WORLD-2DPAGE list - Links to 2-D PAGE database servers http://expasy.org/
Rice Proteome Database http://gene64.dna.affrc.go.jp/RPD/main_en.html
Proteome Database System for Microbial Research http://www.mpiib-berlin.mpg.de/2D-PAGE/
Negative  Proteome Database http://superfly.ucsd.edu/negprot/
The PRIDE  (PRoteomics IDEntifications database) is a centralized standards compliant, public data repository for proteomics data http://www.ebi.ac.uk/pride/
NASC Proteomics database for Arabidopsis data http://proteomics.arabidopsis.info/
GenProtEC is dedicated to the functions encoded by the Escherichia coli  K-12 (strain MG1655) genome http://genprotec.mbl.edu/
Rice Proteome Database http://gene64.dna.affrc.go.jp/RPD/database_en.html
UT Proteomics Database (2D Database http://132.192.61.90/index.php
Organellar Map Database http://proteome.biochem.mpg.de/ormd/
The Global Proteome Machine Database http://gpmdb.rockefeller.edu/
Royan Proteome Database http://www.royanproteomics.ir/
Proteome Database (Lipid Map Database) http://www.lipidmaps.org/data/proteome/index.cgi
2D electrophoresis proteome database http://www.pdata.ua.ac.be/musa/
3D-Genomics - Structural annotations for complete proteomes http://www.sbg.bio.ic.ac.uk/3dgenomics
CEBS: Database of toxicogenomics, microarray and proteomics data http://cebs.niehs.nih.gov/
Psychrobacter arcticum Psychrobacter arcticum 273-4 Genome Page http://cmr.tigr.org/tigr-scripts/CMR/GenomePage.cgi?org=ntpa05
   
 

 

 

Database Submission Form:Submit Databases to DBD in the following format. After verification it will be posted in DBD in 2 or 3 weeks. For further queries contact rrskiran@msrit.edu.

Enter Database Website :

Suitable Keyword:

Institution Name

Official Email Address

 

DBD: Database of Biological Database team are R.R. Siva Kiran, MVN Setty, Department of Biotechnology, MS Ramaiah Institute of Technology, MSR Nagar, Bangalore, India and G. Hanumantha Rao, Center for Biotechnology, Department of Chemical Engineering, Andhra University, Visakhapatnam-530003, India. DBD consists of 1200 Database entries covering wide range of databases useful for biological researchers.

Encouragements List (or list of database contributors)

Andhra University
All Rights Reserved, Maintained by R.R. Siva Kiran, Department of Biotechnology, MS Ramaiah Institute of Technology, Bangalore, India
Last update: 30-July-2008