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Keywords Database Description Website
E.Coli E.Coli Database http://www.uni-giessen.de/~gx1052/IECA/ieca.html
online database for comparative genomics of E. coli and its relatives http://colibase.bham.ac.uk/
List of E.Coli Database http://ecoli.bham.ac.uk/index/dat.html
Escherichia coli K-12 (strain MG1655) genome http://genprotec.mbl.edu/
Encyclopedia of Escherichia coli K-12 Genes and Metabolism http://ecocyc.org/
Essential genes in E. coli :First results of an E. coli gene deletion project http://www.genome.wisc.edu/resources/essential.htm
EHCO:Encyclopedia of Hepatocellular Carcinoma genes Online http://ehco.iis.sinica.edu.tw/
EchoBASE :Post-genomic studies of Escherichia coli http://www.ecoli-york.org/
ASAP - A Systematic Annotation Package Community analysis of E. coli and related genomes https://asap.ahabs.wisc.edu/annotation/php/ASAP1.htm
EcoCyc:E. coli K-12 genome, metabolic pathways, transporters, and gene regulation
Protein interaction database for E. coli http://www.bacteriome.org/
CCDB - The CyberCell Database: E. coli database at U. Alberta http://redpoll.pharmacy.ualberta.ca/CCDB
Colibri: E. coli genome database at Institut Pasteur http://genolist.pasteur.fr/Colibri/
DPInteract: Binding sites for E. coli DNA-binding proteins http://arep.med.harvard.edu/dpinteract/
EBI European Bioinformatics Institute http://www.ebi.ac.uk/Databases/
E-MSD - EBI-Macromolecular Structure Database :EBI's collection of protein structures
EBI Genomes:EBI's collection of databases for the analysis of complete and unfinished viral, pro- and eukaryotic genomes
Ecology Fire Ecology Database http://www.talltimbers.org/info/fedbintro.htm
Evolutionary Ecology Database http://www.plantae.info/
Ecosystem Ecosystem Database http://ecomdb.niaes.affrc.go.jp/e_top_about.php
Terrestrial Ecosystem Database http://www-cger.nies.go.jp/cger-e/db/enterprise/ecosystem/ecosystem_index_e.html
Electron Density Map Macro Molecular Structural Database http://www.ebi.ac.uk/msd/Temblor/Temblor7.html
Electrophoresis Two-Dimensional Electrophoresis Database of HSG cells proteins http://hitech-d.iwate-med.ac.jp/biochem/biochem/kamo/index.html
Electrostatic potentials eF-site - Electrostatic surface of Functional site: Electrostatic potentials and hydrophobic properties of the active sites
Epilepsy CarpeDB: A database on the genetics of epilepsy http://www.carpedb.ua.edu/
Embryonic Stem Cell Human Embryonic Stem Cell Lines http://www.stemcellcommunity.org/metadot/index.pl?id=2181
Endocrine networks EndoNet :Information about the components of endocrine networks
Endogenous Retrovirus Human Endogenous Retrovirus Database http://herv.img.cas.cz/
EROP(Endogenous Regulatory OligoPeptides) EROP-Moscow :A database of Endogenous Regulatory OligoPeptides http://erop.inbi.ras.ru/
Endoplasmic reticulum Database of endoplasmic reticulum resident proteins http://www.mcb.mcgill.ca/~hera/
ER-GolgiDB (a database of predicted ER and Golgi localization based on sequence homology) http://cubic.bioc.columbia.edu/db/ERGolgiDB/
Endosymbiont Drosophila Endosymbiont Database http://flyendo.arl.arizona.edu/
Enzyme Enzyme nomenclature database http://www.expasy.ch/enzyme/
ENZYME :Enzyme nomenclature and sequences
BRENDA: The Comprehensive Enzyme Information System http://www.brenda.uni-koeln.de/
EzCatDB:Enzyme catalytic mechanism database http://mbs.cbrc.jp/EzCatDB/
Enzyme Nomenclature:IUBMB Nomenclature Committee recommendations and updates
Enzyme Structures Database http://www.biochem.ucl.ac.uk/bsm/enzymes/
The Restriction Enzyme Database http://rebase.neb.com/rebase/rebase.html
IntEnz (Integrated relational Enzyme database) http://www.ebi.ac.uk/intenz/
The Enzyme Database http://www.enzyme-database.org/
KEGG LIGAND Database http://www.genome.ad.jp/ligand/
A Database of Enzyme Catalytic Mechanisms http://mbs.cbrc.jp/EzCatDB/
Thermodynamics of Enzyme-Catalyzed Reactions http://xpdb.nist.gov/enzyme_thermodynamics/
Carbohydrate-Active enzymes http://www.cazy.org/
END: Enzyme Nomenclature Database http://www.biocheminfo.org/end/
CSA (Catalytic Site Atlas): Enzyme active sites and catalytic residues in enzymes of known 3D structure http://www.ebi.ac.uk/thornton-srv/databases/CSA/
DSD: Database of dehydrogenase enzyme stereospecificities http://www.jenner.ac.uk/DSD
Epigenetic Chromatin Database http://www.chromdb.org/beginners.html
Epitome:Database of structure-inferred antigenic epitopes
Endoplasmic reticulum Endoplasmic reticulum membrane database http://opm.phar.umich.edu/localization.php?localization=Endoplasmic%20reticulum%20membrane
Erythropoiesis EpoDB - Erythropoiesis Database:Genes expressed during human erythropoiesis http://www.cbil.upenn.edu/EpoDB/
ERGO database
ERGO-Light :Integrated biochemical data on 10 bacterial genomes: Publicly-available portion of the ERGO database http://www.ergo-light.com/

ERIC(Enteropathogen Resource Integration Center )

Enteropathogen Resource Integration Center http://www.ericbrc.org/
Eukaryotic Eukaryotic Promoter Database http://www.epd.isb-sib.ch/
ExInt:Exon-intron structure of eukaryotic genes
eSLDB - eukaryotic Subcellular Localization database:Subcellular localization of entire eukaryotic proteomes
euGenes:Common summaries of gene and genomic information for eukaryotic organisms http://eugenes.org/
EPD:Eukaryotic POL II promoters with experimentally-determined transcription start sites
EPGD :Eukaryotic Paralog Group Database
Ensembl :Annotated information on eukaryotic genomes
Estrogen Responsive Genes Database diArk: Database of eukaryotic sequencing projects http://www.diark.org/
Esterases ERGDB - Estrogen Responsive Genes Database
ESTHER:Esterases and related alpha/beta hydrolase superfamily enzymes
EST (Expressed Sequence Tags) The Expressed Sequence Tags database contains sequence data http://www.ncbi.nlm.nih.gov/dbEST/
Pig Expressed Sequence Tags Database http://pigest.genome.iastate.edu/
Coccolithophorids Expressed Sequence Tags (EST) & Microarray Database http://bioinfo.csusm.edu/
Chicken EST database http://www.chickest.udel.edu/
Phytopathogenic Fungi and Oomycete EST Database http://cogeme.ex.ac.uk/
taxonomically broad EST database http://tbestdb.bcm.umontreal.ca/searches/login.php
Liver EST Database http://lestdb.nhri.org.tw/
CR-EST - Crop ESTs: Barley, wheat, pea, and potato ESTs http://pgrc.ipk-gatersleben.de/cr-est
Diatom EST Database: ESTs from two diatom algae, Thalassiosira pseudonana and Phaeodactylum tricornutum http://www.biologie.ens.fr/diatomics/EST/
EASED - Extended Alternatively Spliced EST Database:Alternatively spliced ESTs http://eased.bioinf.mdc-berlin.de/
EDAS - EST-Derived Alternative Splicing Database:Alternative splicing deduced from EST data http://www.ig-msk.ru:8005/EDAS/
Evolution Creation/Evolution Reference Database http://www.baz.com/litm/CERD/
ECRbase:Evolutionary conserved regions, promoters, and transcription factor binding sites
eggNOG:Evolutionary genealogy of genes: Non-supervised Orthologous Groups
Evolutionary Tree Tree families database http://www.treefam.org/
Exon Structural Exon Database http://glinka.bio.neu.edu/SEDB/SEDB.html
Expasy ExPASy (Expert Protein Analysis System) - UniProt Knowledgebase: Swiss-Prot and TrEMBL http://expasy.org/sprot/
Expression Database Plant Ontology enhanced expression database http://www.plexdb.org/plex.php?database=Barley
E. coli Gene Expression Database http://chase.ou.edu/oubcf/
EICO DB - Expression-based Imprint Candidate Organiser:A database for discovery of novel imprinted genes http://fantom2.gsc.riken.jp/EICODB/
EMAGE:Edinburgh Mouse Atlas gene expression database http://genex.hgu.mrc.ac.uk/Emage/database/
CleanEx: Expression reference database, linking heterogeneous expression data to facilitate cross-dataset comparisons http://www.cleanex.isb-sib.ch/



Database Submission Form:Submit Databases to DBD in the following format. After verification it will be posted in DBD in 2 or 3 weeks. For further queries contact rrskiran@msrit.edu.

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DBD: Database of Biological Database team are R.R. Siva Kiran, MVN Setty, Department of Biotechnology, MS Ramaiah Institute of Technology, MSR Nagar, Bangalore, India and G. Hanumantha Rao, Center for Biotechnology, Department of Chemical Engineering, Andhra University, Visakhapatnam-530003, India. DBD consists of 1200 Database entries covering wide range of databases useful for biological researchers.

Encouragements List (or list of database contributors)

Andhra University
All Rights Reserved, Maintained by R.R. Siva Kiran, Department of Biotechnology, MS Ramaiah Institute of Technology, Bangalore, India
Last update: 30-July-2008