DBD
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Alternative splicingBlastCandida spDEFGHIJKLMNOPQRSTUVWXYZ
 
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Keywords Database Description Website
B-Cell
BCIpep-A database of B-cell epitopes
http://bioinformatics.uams.edu/mirror/bcipep/
Bacteria BCCM/LMG Bacterial Database http://www.cabri.org/CABRI/srs-doc/bccm_lmg.info.html
Pathogenic Bacteria Database http://bac.hs.med.kyoto-u.ac.jp/
HOBACGEN: Homologous Bacterial Genes Database http://pbil.univ-lyon1.fr/databases/hobacgen.html
Bacteria Servers and Databases http://biotech.icmb.utexas.edu/pages/science/bacteria.html
Archaeal and bacterial ABC transporters
http://www-abcdb.biotoul.fr/
BacMap- Picture atlas of annotated bacterial genomes http://wishart.biology.ualberta.ca/BacMap
BANMOKI-A database of bacterial nucleoside monophosphate kinases http://www.ces.clemson.edu/compbio/databases/kinases
BCSDB/Glycoscience- Bacterial Carbohydrate Structure DataBase http://www.glyco.ac.ru/bcsdb/start.shtml
BioCyc - Pathway/genome databases for many bacteria
http://biocyc.org/
DEG - Database of Essential Genes Database of essential genes from bacteria and yeast http://tubic.tju.edu.cn/deg
Bacteriocin BACTIBASE- Bacteriocin natural antimicrobial peptides http://www.pfba-lab.org/bactibase
Bacteriophage Bacteriophage Database Login Required www.biochem.uthscsa.edu/~serwer/phagedb/
Base Pair The primary objective of this database is to provide rapid access to all the RNA structures in which a particular rare base pair has been found. http://www.fli-leibniz.de/IMAGE_BPDIR.html
JenaLib: The Base Pair Directory (The aim of this Base Pair Directory is to compile structural information on nucleic acid base pairs) http://www.fli-leibniz.de/IMAGE_BPDIR.html
Bacillus Bacillus MLST sequence type database http://pubmlst.org/perl/mlstdbnet/mlstdbnet.pl?file=bacillus-mlst.xml
NRSub (Non-Redundant B.subtilis database) http://pbil.univ-lyon1.fr/nrsub/nrsub.html
Bacillus Anthracis Genome Project http://www.tigr.org/tigr-scripts/CMR2/GenomePage3.spl?database=gba
SubtiList World-Wide Web Server (Bacillus) http://genolist.pasteur.fr/SubtiList/
BSORF - Bacillus subtilis Open Reading Frames Bacillus subtilis genome database at Kyoto U http://bacillus.genome.jp/
DBTBS: B. subtilis binding factors and promoters http://dbtbs.hgc.jp/
Beetle BeetleBase: Genome database of the beetle Tribolium castaneum http://www.bioinformatics.ksu.edu/BeetleBase/
Beta sheet Inter-Chain Beta-Sheets (ICBS) http://www.igb.uci.edu/servers/icbs/
Bean Beans Genome Database http://beangenes.cws.ndsu.nodak.edu/
Binding AntiJen-Quantitative binding data for peptides and proteins of immunological interest http://www.jenner.ac.uk/AntiJen
Binding MOAD- Binding Mother of All Databases: a database of protein-ligand crystal structures http://www.bindingmoad.org/
BindingDB-Binding affinities of protein-ligand and other complexes
http://www.bindingdb.org/
EID: Exon-Intron Database :B. subtilis binding factors and promoters http://www.meduohio.edu/bioinfo/eid/
DB-PABP: Database of experimentally characterized polyanion-binding proteins http://ppa.bcf.ku.edu/DB_PABP/
DDIB: Database of domain interactions and binding http://www.ddib.org/
Binding Site Experimentally verified orthologous transcription factor binding sites http://genome.imim.es/datasets/abs2005/
CTCF Binding Site Database Experimentally identified and predicted CTCF binding sties http://insulatordb.utmem.edu/
Biochemical pathway KEGG PATHWAY Database http://www.genome.jp/kegg/pathway.html
Biochemical Pathways http://www.mol-net.de/databases/biopath.html
MetaCyc is a database of nonredundant, experimentally elucidated metabolic pathways. http://metacyc.org/
Metabolic pathway database http://www.wisdom.weizmann.ac.il/~biospi/metDB_links.htm
A biochemical pathway database for Medicago truncatula http://www.noble.org/mediccyc/
RiceCyc home and Biochemical pathways http://www.gramene.org/pathway/
AraCyc: A Biochemical Pathway Database for Arabidopsis www.arabidopsis.org/biocyc/index.jsp
Yeast Biochemical Pathways http://www.yeastgenome.org/biocyc/
aMAZE-A system for the annotation, management, and analysis of biochemical and signalling pathway networks http://www.scmbb.ulb.ac.be/amaze/
Biodefence Biodefense Proteomics Resource Center: Proteomics and host-pathogen interactions for biodefense-related microorganisms http://www.proteomicsresource.org/default.aspx
Biodegradative BSD - Biodegradative Strain Database Microorganisms that can degrade aromatic and other organic compounds http://bsd.cme.msu.edu/
Bioinformatics or Biological List of Bioinformatics Databases http://www.bio.cam.ac.uk/compmolb.html
List of Biological Database http://www.geocities.com/bioinformaticsweb/data.html
Biological Database http://www.biobase-international.com/pages/
Biological Database http://en.wikipedia.org/wiki/Biological_database
Viridans Biological Databases http://www.viridans.com.au/
Bioinformatics Database http://www2.lib.udel.edu/subj/bioinformatics/db.htm
MetaBase (Database of Biological Databases) http://biodatabase.org/index.php/Main_Page
DOD2007: Molecular Biology Databases http://www.progenebio.in/DoD/index.htm
Bioinformatics Link Directory (It consists of database list according to the subject) http://bioinformatics.ca/links_directory/
ChEBI - Chemical Entities of Biological Interest http://www.ebi.ac.uk/chebi/
ChemBank: Structures and biological activities of small organic molecules http://chembank.broad.harvard.edu/
Biological Data BIOZON: A system for unification and analysis of heterogeneous biological data http://biozon.org/
Biomodels BioModels: Mathematical models of biochemical and cellular systems http://www.ebi.ac.uk/biomodels/
Biomolecules BRITE - Biomolecular Relations in Information Transmission and Expression Molecular interactions and pathways database, part of the KEGG system http://www.genome.ad.jp/brite
Bioremediation Hawaii Bioremediation Database http://www.hawaii.edu/abrp/dbase.html
Biotechnology GEN Biotechnology Database http://www.gendatabaseonline.com/
BLAST BLAST Search Tool http://www.ncbi.nlm.nih.gov/BLAST/
Blocks Blocks: Multiple alignments of conserved regions of protein families http://blocks.fhcrc.org/
eBLOCKS:Highly conserved protein sequence blocks http://fold.stanford.edu/eblocks/acsearch.html
Bos [Bovine/Cow/Cattle] Mapping the Bovine Genome http://locus.jouy.inra.fr/cgi-bin/bovmap/intro2.pl
The Bovine Genome Database http://racerx00.tamu.edu/bovine/index.html
Brain BGED - Brain Gene Expression Database http://genome.mc.pref.osaka.jp/BGED/
Brassica Brassica BASC: A database for Brassica genomic research http://hornbill.cspp.latrobe.edu.au/cgi-binpub/brassica/index.pl
Buchnera sp. BuchneraBase: Genome of the pea aphid symbiont Buchnera sp. APS http://www.buchnera.org/
Butterflies ButterflyBase: Genomics of butterflies (Lepidoptera) http://www.butterflybase.org/

 

 

Database Submission Form:Submit Databases to DBD in the following format. After verification it will be posted in DBD in 2 or 3 weeks. For further queries contact rrskiran@msrit.edu.

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DBD: Database of Biological Database team are R.R. Siva Kiran,MVN Setty, Department of Biotechnology, MS Ramaiah Institute of Technology, MSR Nagar, Bangalore, India and G. Hanumantha Rao, Center for Biotechnology, Department of Chemical Engineering, Andhra University, Visakhapatnam-530003, India. DBD consists of 1200 Database entries covering wide range of databases useful for biological researchers.

Encouragements List (or list of database contributors)

Andhra University
All Rights Reserved, Maintained by R.R. Siva Kiran, Department of Biotechnology, MS Ramaiah Institute of Technology, Bangalore, India
Last update: 30-July-2008