DBD
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Keywords Database Description Website
Radiation hybrid Radiation hybrid database http://www.ebi.ac.uk/RHdb/
Radiation hybrid mapping information page http://compgen.rutgers.edu/rhmap/
Rat Radiation Hybrid http://www.ratmap.org/ratrh.html
Mouse Radiation Hybrid Mapping Project (List of database) http://www.cns.fr/externe/English/Projets/Projet_ZZZ/link.html
Radiation Hybrid Database http://janice.kaist.ac.kr/~gomeisa/wiki/wiki.php/RadiationHybridDatabase
Radiation Hybrid (RHP) http://hmgc.mcw.edu/bp/projects/aa/rhp.asp
Rat Rat Genome Database http://rgd.mcw.edu/
Who's A Rat - Largest Online Database of Informants and Agents http://www.whosarat.com/
Rat Data Base (Matsumoto's Lab) http://www.anex.med.tokushima-u.ac.jp/rat/index-e.html
The Rat Genome Database RatMap http://ratmap.gen.gu.se/
This IPD - MHC RAT Database is intended to provide information about loci and alleles of the RT1 complex, the major histocompatibility complex of the laboratory rat (Rattus norvegicus). http://www.ebi.ac.uk/ipd/mhc/rat/
ARB Rat Genetic Database http://www.niams.nih.gov/rtbc/ratgbase/
Rat Genome Database http://brc.mcw.edu/personnel/teams/rgd.asp
Rat Mapping Resources http://www.well.ox.ac.uk/rat_mapping_resources/
rOGED : Rat Ovarian Gene Expression Database http://app.mc.uky.edu/kolab/rogedendo.aspx
Rattus norvegicus Promoter Database (RnPD) http://rulai.cshl.edu/cgi-bin/CSHLmpd2/rnpd.pl
Human, Mouse, Rat BAC End Sequence Search http://tigrblast.tigr.org/er-blast/?project=hmrbe
LOX-DB - LipOXygenases DataBase http://www.dkfz.de/spec/lox-db/show-entry.php?lox=flap-rat
WIBR/MIT Rat Database http://ratmap.ims.u-tokyo.ac.jp/menu/blast_wm.html
Rat Database Kyoto http://www.anim.med.kyoto-u.ac.jp/database/rdb_pub/Results/editor/database_editor.asp
issg Database: Ecology of Rattus norvegicus http://www.issg.org/database/species/ecology.asp?si=159
Rattus norvegicus (33 proteins) http://opm.phar.umich.edu/species.php?species=Rattus%20norvegicus
uniq-ncRNAs List in Rattus norvegicus http://www.bioinfo.org.cn/noncode/listncrna.php?tax=!norvegicus+Rattus
tRNAscan-SE Analysis of the Rattus norvegicus (rn3 June 2003) Genome http://lowelab.ucsc.edu/GtRNAdb/Rnorv/Rnorv-notes.html
Species Rattus norvegicus  (Rat) http://beta.uniprot.org/taxonomy/10116
Explore the Rattus norvegicus genome http://www2.bioinformatics.tll.org.sg/Rattus_norvegicus/
rDNA Plant Pathogen rDNA Database http://cpgr.tigr.org/cgi-bin/cpgr_rdna/cpgr_rdna_db.pl
Recombinant Recombinant Virus Database (RVD) http://www.brc.riken.jp/lab/dna/rvd/
Protein Infrared Database http://www.unco.edu/nhs/chemistry/faculty/dong/irdata.htm
Repetitive DNA LREP: Legume Repetitive DNA Database http://bioweb.abc.hu/lrep/
Replicons Database of Plasmid Replicons http://www.essex.ac.uk/bs/staff/osborn/DPR_home.htm
Rhodococcus Genome Database - Replicon map http://www.rhodococcus.ca/maps/NC_008269/imageMap.jsp
Restriction Enzyme REBASE (The restriction enzyme database) http://rebase.neb.com/rebase/rebase.html
Restriction Maps http://www.vivo.colostate.edu/molkit/mapper/index.html
Retroposon Retroposon Bank http://www.retroposonbase.com/index.cfm
Retrotransposon dbRIP is a database of human Retrotransposon Insertion Polymorphisms (RIPs), http://falcon.roswellpark.org:9090/
RetrOryza : The Rice LTR Retrotransposon database http://www.retroryza.org/
Retrovirus Retrovirus Tagged Cancer Gene Database http://rtcgd.abcc.ncifcrf.gov/
Human Endogenous Retrovirus Database http://herv.img.cas.cz/
Database of Antiretroviral Drug Interactions http://hivinsite.ucsf.edu/InSite?page=ar-00-02
Retroviridae Genome http://www.ncbi.nlm.nih.gov/retroviruses/
RTCGD: retroviral tagged cancer gene database. http://journals.biohealthmatics.com/articles/0014681473.aspx
Ribonuclease RNase P Database http://www.mbio.ncsu.edu/RNaseP/
Ribonucleic Acid (RNA) RNA Database http://www.rnabase.org/
Noncoding RNA database http://biobases.ibch.poznan.pl/ncRNA/
The European ribosomal RNA database http://www.psb.ugent.be/rRNA/index.html
RNA Databases (List of RNA Database) http://www.bioexplorer.net/Databases/RNA_Databases/
Ribosomal Database http://rdp.cme.msu.edu/
RNAdb (RNA Database) http://research.imb.uq.edu.au/rnadb/
The RNA Modification Database http://library.med.utah.edu/RNAmods/
RNA families database of alignments and CMs http://www.sanger.ac.uk/Software/Rfam/
The Subviral RNA Database http://penelope.med.usherb.ca/subviral/
RNA Sequence Database http://www.progenebio.in/DoD/rna_db.htm
siRNA Database and Resources for RNA Interference Studies http://www.rnainterference.org/
RNA DATABASES (List of rna database) http://www.ebioinfogen.com/rna.htm
RAD (RNA Abundance Database) http://www.cbil.upenn.edu/RAD/
RNA Energy Database http://bioinformatics.iiit.ac.in/rnadb/tempSearch2.php
A portal site for functional RNAs and non-coding RNAs http://www.ncrna.org/
Viral RNA Structure Database http://rna.tbi.univie.ac.at/cgi-bin/virusdb.cgi
he RNA Integrity database (RINdb) is a freely accessible collection of records containing electropherograms, RIN and other sample metadata. http://www.chem.agilent.com/rin/_rinSearch.aspx
fRNAdb: Functional RNA Database http://www.ncrna.org/frnadb
RNA Editing Database http://biologia.unical.it/py_script/search.html
Database of RNA Tree Graphs http://monod.nyu.edu/rna/tree/rna_database/list.html
Modomics - Database of RNA Modifications http://modomics.genesilico.pl/
oRNABase, a comprehensive database of human H/ACA and C/D box snoRNAs. http://www-snorna.biotoul.fr/
ExpressDB RNA Expression Database http://arep.med.harvard.edu/cgi-bin/ExpressDByeast/EXDStart
SARS-CoV RNA SSS DATABASE http://www.liuweibo.com/sarsdb/
ssu rRNA database A database on the structure of ssu ribosomal subunit RNA (further abbreviated as ssu rRNA) is ... The European ribosomal RNA database http://www.psb.ugent.be/rRNA/ssu/index.html
European rRNA database :All complete or nearly complete rRNA sequences
http://www.psb.ugent.be/rRNA/
Small Nucleolar RNAs (snoRNAs) from the Yeast Saccharomyces cerevisiae: A comprehensive database of S. cerevisiae H/ACA and C/D box snoRNAs. http://people.biochem.umass.edu/fournierlab/snornadb/snoRNA_DataBase.html
3D Analysis :  Coordinate Files of RNA Database http://kinemage.biochem.duke.edu/databases/rnadb.php
 RNA Useful Links and database list http://www.man.poznan.pl/5SData/Links.html
Protein-RNA Interaction Database http://www-bioc.rice.edu/~shamoo/prid.html
The Ribosomal RNA Operon Copy Number Database http://rrndb.cme.msu.edu/
dbRES: A web-oriented database for annotated RNA Editing Site http://bioinfo.au.tsinghua.edu.cn/dbRES/
RNA informatics (list of database) http://www-lbit.iro.umontreal.ca/RNA_Links/RNA.shtml
miRBase: the home of microRNA data http://microrna.sanger.ac.uk/sequences/
The Zebrafish  RNA Database (ZDB) http://zfin.org/zf_info/dbase/PAPERS/ZFIN_DataModel/sectionii_16.html
RNA databases (List of RNA Database) http://www.biodirectory.com/biowiki/RNA_databases
RNA Structure Database http://www.rnabase.org/contact/
Functional DNA/RNA site activity http://wwwmgs.bionet.nsc.ru/mgs/systems/activity/
ARED-AU-rich element-containing mRNAs
http://brp.kfshrc.edu.sa/ARED
Ribosomal Ribosomal Database http://rrndb.cme.msu.edu/
Ribosomal Database http://rdp.cme.msu.edu/
Ribosomal Database http://www.psb.ugent.be/rRNA/index.html
16S and 23S Ribosomal RNA Mutation Database http://ribosome.fandm.edu/
Ribosomal Protein Gene Database http://ribosome.miyazaki-med.ac.jp/
5S Ribosomal RNA Database http://biobases.ibch.poznan.pl/5SData/
DRC - Database of Ribosomal Crosslinks http://www.mpimg-berlin-dahlem.mpg.de/~ag_ribo/ag_brimacombe/drc/
Ribozyme Hammerhead Ribozyme http://www.tulane.edu/~biochem/nolan/lectures/rna/ham.htm
Database of mRna Related Information http://uther.otago.ac.nz/Transterm.html
Rice  TIGR Rice Genome Annotation http://www.tigr.org/tdb/rice
Rice Database (RAP-DB) http://www.dna.affrc.go.jp/database/
The Korea Rice Genome Database http://bioserver.myongji.ac.kr/ricemac.html
BGI-RISe - Beijing Genomics Institute Rice Information System Database http://rise.genomics.org.cn/rice/index2.jsp
Rice Kinase Databse http://rkd.ucdavis.edu/
Wild Rice Database http://www.pgcdna.co.jp/wrdb/index.html
Rice Expression Database http://red.dna.affrc.go.jp/RED/
Rice Mutation Database (RMD) http://rmd.ncpgr.cn/
Rice Proteome Database (RPD) http://gene64.dna.affrc.go.jp/RPD/main_en.html
IR64 Rice Mutant Database http://www.iris.irri.org:8080/IRFGC/ir64.shtml
Complete Rice (Oryza sp.) Sequences http://www.gramene.org/resources/
Rice MPSS Database http://mpss.udel.edu/rice/
Rice GD (Genome database of Chinese super hybrid rice) http://btn.genomics.org.cn:8080/rice/
Rice transcription factor database http://ricetfdb.bio.uni-potsdam.de/v2.0/
RiceGAAS: Rice Genome Annotation Database http://ricegaas.dna.affrc.go.jp/rgadb/
The MIPS Oryza sativa Database (MOsDB) http://mips.gsf.de/proj/plant/jsf/rice/index.jsp
Cereal Small RNA Database: Small RNAs expressed in rice and maize http://sundarlab.ucdavis.edu/smrnas/
RNA List of RNA Database http://www.biodirectory.com/biowiki/RNA_databases
RNA Transcripts Natural Antisense Transcripts (NATs) are RNAs that are at least partially complementary to other endogenous RNAs. http://natsdb.cbi.pku.edu.cn/
rRNA SSU rRna Modification Database http://134.58.19.20/ssu/ssu.htm
Prokaryotic 16s rRna signature database http://prion.bchs.uh.edu/16S_signatures/
RT – PCR RTPrimerDB (Real Time PCR Primer and Probe Database) http://medgen.ugent.be/rtprimerdb/

 

 

Database Submission Form:Submit Databases to DBD in the following format. After verification it will be posted in DBD in 2 or 3 weeks. For further queries contact rrskiran@msrit.edu.

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DBD: Database of Biological Database team are R.R. Siva Kiran, MVN Setty, Department of Biotechnology, MS Ramaiah Institute of Technology, MSR Nagar, Bangalore, India and G. Hanumantha Rao, Center for Biotechnology, Department of Chemical Engineering, Andhra University, Visakhapatnam-530003, India. DBD consists of 1200 Database entries covering wide range of databases useful for biological researchers.

Encouragements List (or list of database contributors)

Andhra University
All Rights Reserved, Maintained by R.R. Siva Kiran, Department of Biotechnology, MS Ramaiah Institute of Technology, Bangalore, India
Last update: 30-July-2008