DBD
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Alternative splicingBlastCandida spDEFGHIJKLMNOPQRSTUVWXYZ
 
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Keywords Database Description Website
Aedes sp. Aedes aegypti Database http://www.broad.mit.edu/annotation/disease_vector/aedes_aegypti/
AceDB A hierarchical database system for displaying genomic data (Caenorhabdis elegans) http://www.acedb.org/
Adapters

UniVec Vector sequences, adapters, linkers and primers used in DNA cloning, can be used to check for vector contamination

http://www.ncbi.nlm.nih.gov/VecScreen/UniVec.html

Affymetrix probesets NetAffx Public Affymetrix probesets and annotations http://www.affymetrix.com/
Alignment Homologous Structure Alignment Database (HOMSTRAD) http://www-cryst.bioc.cam.ac.uk/~homstrad/
Protein Alignments organised as Structural Superfamilies http://caps.ncbs.res.in/campass/pass2.html
EMBL-ALIGN Information for Submitters http://www.ebi.ac.uk/embl/Submission/alignment.html
Standards Alignment Database Homepage http://standards.netacad-currdev.net/home/default.asp
BAliBASE (version 2.0): A benchmark alignment database, http://bips.u-strasbg.fr/fr/Products/Databases/BAliBASE2/
The SCANPS VERSION 2.3.9 protein sequence scanning package - User Guide. http://www.compbio.dundee.ac.uk/Software/Scanps/scanps.html
SAD-A normalized structural alignment database: improving sequence--structure alignments http://portal.acm.org/citation.cfm?id=1092906.1093101
A Multiple Alignment Database http://www.daimi.au.dk/~besen/TBiB2006/projects/project2.html
Alternative Splicing Alternative Splicing Database http://hazelton.lbl.gov/~teplitski/alt/
EDAS: EST Derived Alternative Splicing Database http://www.ig-msk.ru:8005/EDAS/
ASTD: Alternative Splicing and Transcript Diversity http://www.ebi.ac.uk/astd/main.html;jsessionid=D55E5F0D3C1485A4C56AC1004EBDD67F
Human Genes with Alternative Splicing http://moult.umbi.umd.edu/human2004/
Alternative Splice Site Predictor (ASSP) http://www.es.embnet.org/~mwang/assp.html
Alternative Splicing website http://www.exonhit.com/index.php?page=59
Hollywood RNA Alternative Splicing Database http://hollywood.mit.edu/Login.php
Plant Alternative Splicing Database http://pasdb.genomics.org.cn/
H-DBAS: Human Database of  Alternative Splicing http://jbirc.jbic.or.jp/h-dbas/
Manually Annotated AlternativelySpliced Events (MAASE) database system http://maase.genomics.purdue.edu/
Putative Alternative Splicing Database (PALS db) http://ymbc.ym.edu.tw/palsdb/
ProSplicer : An Alternative Splicing Database based on Protein, mRNA, and EST Sequences http://prosplicer.mbc.nctu.edu.tw/
ECgene: Genome Annotation for Alternative Splicing http://genome.ewha.ac.kr/ECgene/
ASTRA (Alternative Splicing and TRanscription Archives) is the database of elementary patterns of alternative splicing and transcriptional initiation. http://alterna.cbrc.jp/
TassDB: TAndem Splice Site DataBase (TassDB stores extensive data about alternative splice events at GYNGYN donors and NAGNAG acceptors) http://helios.informatik.uni-freiburg.de/TassDB/
FastDB: Friendly Alternative Splicing and Transcripts Database http://www.fast-db.com/fastdb2/frame.html
Alternative Splicing Database http://www.bioinformatics.ucla.edu/ASAP2/
Alternative Splicing in Plants http://www.plantgdb.org/ASIP/
PALS db: Putative ALternative Splicing Database http://binfo.ym.edu.tw/passdb/index.html
ASHESdb - Alternatively Spliced Human genes by Exon Skipping - A Database http://sege.ntu.edu.sg/wester/ashes/links.htm
Splicerator (Integrated Human Alternative Splicing Database) http://dbsdb.nus.edu.sg/ihas/
European Alternative Splicing Database (Exonhit) http://www.exonhit.com/index.php?page=208&PHPSESSID=3e8528sm06npg0tm70sbehijr0
Agricultural Agriculture and Food SEARCHABLE DATABASE http://earthtrends.wri.org/searchable_db/index.php?theme=8
Agricultural Database http://www.sdnbd.org/sdi/issues/agriculture/database/index.htm
The NAL Catalog (AGRICOLA) provides citations to agricultural literature. http://agricola.nal.usda.gov/
Syrian Agriculture Database http://www.napcsyr.org/sadb.htm
Amino Acid DATABASES; PROTEIN/AMINO ACID http://www.bioscience.org/urllists/protdb.htm
Amino acid indices http://www.genome.ad.jp/aaindex/
Amino acid-nucleotide interaction database http://aant.icmb.utexas.edu/
Annelling Annealing Data Base http://www.ailab.si/orange/doc/datasets/anneal.htm
Annotation An open access database for gene regulatory element and polymorphism annotation http://www.oreganno.org/oregano/Index.jsp
Columba - A Database of Protein Structure Annotation http://www.columba-db.de/
Cyanobacteria Gene Annotation Database http://cyano.genome.jp/
Fungal EST Annotation Database (FEADB) https://fungalgenomics.concordia.ca/feadb/search.php
GadFly: Genome Annotation Database of Drosophila http://www.fruitfly.org/annot/
GALA: Genome Alignment and Annotation Database http://gala.cse.psu.edu/
HCNetDat is a DNA microarray gene annotation database http://www.hartwellcenter.org/hcnetdat/
RAD (Rice Annotation Database) is a contig-oriented database for high-quality manual annotation of RGP, which can present non-redundant contig analyses by merging the accumulated PAC/BAC clones. http://golgi.gs.dna.affrc.go.jp/SY-1102/rad/
RiceGAAS: Rice Genome Automated Annotation System http://ricegaas.dna.affrc.go.jp/
The Vertebrate Genome Annotation (VEGA) database is a central repository for high quality, frequently updated, manual annotation of vertebrate finished genome sequence. http://vega.sanger.ac.uk/index.html
The TIGR Arabidopsis thaliana Genome Annotation Database http://www.tigr.org/tdb/e2k1/ath1/ath1.shtml
Zebrafish Chip Annotation Database contains putative annotations for the probes in the Zebrafish oligonucleotide array (Compugen). http://giscompute.gis.a-star.edu.sg/~govind/zebrafish/version2/ 
Anopheles The Anopheles Genome Programme http://www.anobase.org/
Anopheles information resource http://www.anopheles.org/
MR4 Anopheles Database http://www2.ncid.cdc.gov/a2k/
Antibody Antibody Database http://www.antibodyresource.com/onlinedata.html
Antibody online Database http://www.antibodies-online.com
Antigen Peptide Antigen Database http://www.proteinlounge.com/peptide_home.asp
Arabidopsis thaliana ATIDB is the "Arabidopsis thaliana Integrated Database". http://www.atidb.org/
Arabidopsis thaliana  Information Resource http://www.arabidopsis.org/
Archaeal Archaeal and bacterial ABC transporters
http://www-abcdb.biotoul.fr/
Ascidian Ascidian Body Atlas http://ciona.lab.nig.ac.jp/ascidian/top.html

 

 

Database Submission Form: Submit Databases to DBD in the following format. After verification it will be posted in DBD in 2 or 3 weeks. For further queries contact rrskiran@msrit.edu.

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DBD: Database of Biological Database team are R.R. Siva Kiran, MVN Setty, Department of Biotechnology, MS Ramaiah Institute of Technology, MSR Nagar, Bangalore, India and G. Hanumantha Rao, Center for Biotechnology, Department of Chemical Engineering, Andhra University, Visakhapatnam-530003, India. DBD consists of 1200 Database entries covering wide range of databases useful for biological researchers.

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All Rights Reserved, Maintained by R.R. Siva Kiran, Department of Biotechnology, MS Ramaiah Institute of Technology, Bangalore, India
Last update: 30-July-2008